Events calling

Shortcut to call all simple and complex event types on JaBbA graph using standard settings on all event callers.

events(gg, verbose = TRUE, mark = FALSE, QRP = FALSE)

Arguments

gg

gGraph

verbose

verbose output Default: TRUE

mark

Default: FALSE

QRP

qrp events Default: FALSE

Value

gGraph with nodes and edges annotated with complex events in their node and edge metadata and in the graph meta data field $events

returns a gg with events found. A complete list of events include: amplifcation events (tyfonas, dm, cpxdm, bfb), chromothripsis, deletions, duplications, chromoplexies, tic's, and if QRP is True, qrp, qrpmix, qrppos, and qrpmin.

For more information on event calling please follow the tutorial in gGnome:

Classifying SV Events