Simple Event Calling

Call simple events in gGraph

simple(
  gg,
  reciprocal.thresh = 10000,
  tra.pad = 1e+06,
  mark = TRUE,
  mark.col = "purple"
)

Arguments

gg

gGraph, must have 'cn' node and edge annotation

reciprocal.thresh

reciprocal threshold added to alt.shadows to find translocations Default: 1e4

tra.pad

translocation padding to add on when finding locations Default: 1e6

mark

logical flag specifying whether to mark fold backs Default: TRUE

mark.col

character specifying colors to mark graph with Default: 'purple'

Value

gGraph object containing labeling the putative event

Details

simple event calling includes 3 events: inversion, inverted duplication, and translocation.

For how to run this function: Simple