Get reciprical connected junctions — reciprocal • gGnome

Identifies reciprocally connected junctions, i.e. breakends from non-identical junctions that are "linked" by an inter-breakpoint distance less than a given threshold. Edges and nodes are marked by the "ecluster" metadata field

reciprocal(gg, thresh = 5e+05, max.small = 10000)

Arguments

gg: gGraph
thresh: threshold for edge clusters. Default: 5e5
max.small: max small threshold for edge clusters. Default: 1e4

Value

gGraph with $ecluster marking on nodes and edges labeling unique reciprocal events

Details

Reciprocal junctions are junctions with breakends that are mutually adjacent and opposite.

i.e. breakends from non-identical junctions that are "linked" by an inter-breakpoint distance less than a given threshold. Edges and nodes are marked by the "ecluster" metadata field