haplograph

Haplograph creates a graph from a set of walks each which is joined to a reference graph backbone i.e. each haplotype is a bubble on the original reference graph

Haplotype ends also branch to each other, as long as the termini of both haplotype's end nodes are contained in the other end node.

haplograph(walks, breaks = NULL)

Arguments

walks

gWalk or GRangesList (with seqinfo fully populated)